UCSC Genome Browser

Basics

UCSC Genome Browser Basics. Part 1: Getting around in the Browser

Not going to be covered in depth but still a good reference

• UCSC Genome Browser Basics, Part 2: Configuring the Browser
• UCSC Genome Browser Basics. Part 3: Configuration + DNA navigation

Track Hubs

Hub Connect

Hub Connect Link Example Hub repo

WIP: Creating a Track Hub

We're going to connect to our own track hub as a GitHub repo using the nf-core chipseq full test results.

Track Hub help documentation

Steps to Reproduce

The Secrets Of Custom Tracks

1. Download the Test data
2. Move it to a new directory ~/Downloads/*.bigWig ~/chip-seq-data-hub
3. Initialize the git repo git init
4. Setup git lfs
5. Track the bigWig files git lfs track "*.bigWig"
6. Commit the changes git add . and commit
7. Push the changes up.
8. Create a file name hub.txt

hub.txt