Overview
| WEEK | TUESDAY | THURSDAY |
|---|---|---|
| 1 | Introduction | Setup Environment |
| 2 | Reproducible Computing | Interactive Computing |
| 3 | Conda | HPC |
| 4 | Transcriptomics | Intro to nf-core |
| 5 | Epigenomics | Jupyter on Slurm & scRNA-Seq |
| 6 | Epigenomics | UCSC Genome Browser & Xena Browser |
| 7 | Mutations | Lab: TBA |
| 8 | Lab: TBA | Lab: TBA |
| 9 | Final Project Presentations | Final Project Presentations |
| 10 | Concluding Remarks |
Course Alumni
| Alumni | Semester | GitHub | ag-intro Repo | Final Project Repo |
|---|---|---|---|---|
| Edmund Miller | 21U | EMiller88 | Emiller88/ag-intro | |
| Stephanie Yamauchi | 21U | syamauchi2000 | syamauchi2000/ag-intro | |
| Hiba Fatima | 21U | hxf190002 | hxf190002/ag-intro | |
| Mufeed Kamal | 21U | Mufeedmk4 | Mufeedmk4/ag-intro | |
| Saleh Karim | 21U | Salehkarim21 | Salehkarim21/6-1-2021-Repo | |
| Muneer Yaqub | 21U | muneeryaqub | muneeryaqub/ag-intro | |
| Luke Ballew | 21U | lxb190012 | lxb190013/ag-intro |